FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476198
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC8780.18437708684202792No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6600.13859781015459954No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6290.13208791301097442No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6210.13040793955455504No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5180.1087782813031554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)