FastQCFastQC Report
Sun 21 May 2023
EGAF00007943351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491563
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11590.23577852686227402No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGG11510.23415106507202535No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA11130.22642062156834425No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10820.22011420713113067No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10000.203432723781082No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9040.1839031822980981No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG7210.1466749938461601No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7070.14382693571322497No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6980.1419960411991952No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6420.13060380866745464No Hit
GGACAGAGAGGCGGTTTTAGCGTTGGACAGTTTGAAGGTTG5840.11880471068815189No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5560.11310859442228158No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5290.10761591088019236No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGG5280.10741247815641128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)