FastQCFastQC Report
Sun 21 May 2023
EGAF00007943352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491563
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23010.46809869742026966No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGCGT10880.2213348034738172No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG10680.21726614899819555No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG10650.2166558508268523No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10330.21014600366585767No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9670.19671944389630627No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9050.1841066150218792No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9000.18308945140297378No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA7510.15277797555959255No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7250.14748872474128444No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6760.13752052127601141No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6660.13548619403820059No Hit
GCCAGCGCACAGGGTACGGCGGACGATACCAAC5920.12043217247840053No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCACGT5460.11107426718447075No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5110.10395412185213287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)