FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466236
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA21590.46307020478899097No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG19510.4184576051613346No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15240.3268730857334054No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA14600.3131461320018188No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG13980.2998481455743443No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9410.2018291165847339No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8440.181024202335298No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7720.16558137938726308No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6700.14370404687754698No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6660.14284611226932284No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6570.14091575940081846No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6460.13855643922820202No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6090.13062054410212853No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG6020.12911915853773626No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG5790.12418603454044733No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5770.12375706723633524No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5590.11989636149932652No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5520.11839497593493424No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5200.11153149906914094No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5180.11110253176502888No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5020.10767079333213223No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4930.10574044046362785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)