FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466236
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG49091.0529002479431018No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21280.4564212115752537No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15080.3234413473005088No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC14720.3157199358264913No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA14210.30478126957163326No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT9640.20676224058202283No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8550.18338352250791443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7880.16901311782015974No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7050.1512109746995084No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6830.14649233435427553No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6650.1426316286172668No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6610.14177369400904263No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6230.13362331523091311No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6150.13190744601446477No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG5920.12697432201717584No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5830.12504396914867147No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC5780.12397155088839128No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC5700.12225568167194295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5420.11625013941437383No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5420.11625013941437383No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG5290.11346185193764531No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4850.10402457124717952No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA4840.1038100875951235No Hit
TCTGGCTACGAAATTGACCACATCGACCTGGAT4680.10037834916222686No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)