FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482746
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT16190.33537305332410833No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG14360.2974649194400368No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA12030.2491993719264375No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9060.18767633496704272No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7770.16095420780286113No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA7740.16033276298508947No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG7740.16033276298508947No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7700.15950416989472724No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7290.15101109071851448No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7050.1460395321763412No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6750.13982508399862453No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG6350.13153915309500236No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6280.13008911518686844No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6020.12470326009951403No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5170.10709565692931687No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT4920.10191695011455298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)