FastQCFastQC Report
Wed 31 May 2023
EGAF00007943358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482746
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23400.4847269578618984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18470.38260285947475486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC16190.33537305332410833No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG15600.32315130524126556No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC13360.2767500921809813No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT13110.27157138536621744No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11750.24339922029390196No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG8480.1756617351567905No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7780.16116135607545168No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7650.15846842853177448No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7210.14935390453779004No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT6410.13278204273054567No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6360.13174630136759288No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6300.13050341173204957No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5360.1110314741085374No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA4930.10212409838714356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)