FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445790
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20340.45626864667219996No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT19980.44819309540366536No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8550.19179434262769465No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7890.17698916530204806No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC5320.11933870207945445No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)