FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447911
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8110.18106275577067765No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6330.14132271812927122No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6310.1408762008524015No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6200.13842035582961792No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5440.12145269930856799No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5190.11587123334769629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)