FastQCFastQC Report
Wed 31 May 2023
EGAF00007943365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480517
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14430.3003015502052997No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13750.2861501258020008No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT13380.2784500860531469No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT11830.2461931627809214No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT10820.2251741353583744No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG10620.22101195171034532No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9890.20581998139503907No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG8580.17855767850044846No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8500.17689280504123683No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT8470.17626847749403246No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT8250.17169007548120044No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7970.16586301837395973No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT7770.1617008347259306No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5550.11550059623280758No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5390.1121708493143843No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5040.10488702793033336No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT4960.10322215447112174No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC4960.10322215447112174No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4930.10259782692391736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)