FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480517
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22100.4599212931072158No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT20370.423918404551764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14250.2965555849220735No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13530.2815717237891687No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC12280.25555807598898683No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT11340.23599581284325008No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG10300.21435245787349874No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10010.20831729158385653No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9980.2076929640366522No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9400.1956226314573678No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA8950.18625771824930232No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT8820.1835522988780834No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC8410.17501982239962374No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG8160.16981709283958735No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6040.12569794617047889No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5680.1182060156040265No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5580.11612492378001195No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5490.11425194113839886No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5410.1125870676791872No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5150.10717622893674937No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4840.10072484428230427No Hit

[OK]Adapter Content

Adapter graph