FastQCFastQC Report
Wed 31 May 2023
EGAF00007943367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500489
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA13760.2749311173672149No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9670.19321103960326802No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8870.17722667231447642No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC8140.16264093716345412No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGT7140.14266047805246468No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5020.10030190473716706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)