FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500489
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA13750.27473131277610496No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG11270.2251797741808511No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9460.1890151431899602No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9310.1860180743233118No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG8400.1678358565323114No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCGGC7350.1468563744657725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5470.10929311133711231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)