FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450900
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13560.30073186959414505No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13330.29563096030161895No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12230.2712353071634509No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11790.2614770459081836No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10640.23597249944555332No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9820.21778664892437347No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9550.2117986249722777No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9240.2049234863606121No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8990.1993790197383012No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA8100.17964071856287425No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8050.17853182523841207No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7970.17675759591927256No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7610.1687735639831448No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7100.15746285207363053No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6830.1514748281215347No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6710.14881348414282547No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6410.14216012419605234No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6400.1419383455311599No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG6120.13572854291417163No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6050.13417609225992458No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG5810.1288534043025061No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA4520.10024395653138167No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4520.10024395653138167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)