FastQCFastQC Report
Wed 31 May 2023
EGAF00007943374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479636
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG28820.6008723281822048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22780.47494349881993847No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12400.25852938478346077No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9860.20557255919071965No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8580.17888565495500755No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7290.15199025927995397No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6990.14573551609970894No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6830.14239965307024494No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5640.11758917178860637No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5560.11592124027387436No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCACC5360.11175141148704434No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5330.11112593716901985No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG4970.10362024535272582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)