FastQCFastQC Report
Sun 21 May 2023
EGAF00007943375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499768
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15030.3007395431480207No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9630.19268940788525876No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA8490.16987882377423125No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7360.1472683325062829No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG7210.1442669398600951No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6900.13806406172464022No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC6190.12385746986601784No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6020.12045589153367163No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG5940.11885514878903812No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5720.11445310624129597No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5280.10564902114581166No Hit
ATCCGGCTGGAACAGGGCACCCAGTTTAGAGCTGCGGATAG5070.1014470714411487No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5020.10044660722575276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)