FastQCFastQC Report
Sun 21 May 2023
EGAF00007943376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499768
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25240.5050343359318724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14640.2929359222679323No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT9960.199292471706872No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9720.19449024347297145No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8730.17468105200813178No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC8230.16467640985417234No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7770.15547213907252966No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT7740.1548718605432921No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6770.13546285476461079No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA6230.1246578412383346No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG5980.11965552016135488No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5960.11925533447519648No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC5330.10664948536120761No Hit
AGCGACCGTGGCGCTTCCGCACTGCAGCTGGAA5270.10544892830273248No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5080.10164716428422789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)