FastQCFastQC Report
Wed 8 May 2024
EGAF00007943377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459399
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10310.22442364915900992No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10030.21832872949222787No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7760.1689163450508164No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6730.14649574770515392No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6170.13430590837158984No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5970.1299523943238884No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5920.12886401581196302No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5730.12472817746664665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)