FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459399
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22350.4865051948306374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14610.3180242011845912No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9700.21114543131352048No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7850.17087542637228206No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7060.1536790458838613No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6800.14801947762184942No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6620.14410131497891812No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6330.137788719609751No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5880.12799331300242273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)