FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495383
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16190.32681783589666985No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15250.30784261874145863No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12950.26141389591487796No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12670.25576170357077255No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11300.2281063338871136No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11240.22689514981337672No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA10360.20913111673190238No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9360.18894471550295427No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8800.17764033081474334No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8280.16714340217569032No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG8000.16149120983158485No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7890.15927070569640056No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7710.1556371534751899No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7680.15503156143832147No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7220.14574581687300533No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7140.14413090477468948No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6890.13908430446745246No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6800.13726752835684713No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC6780.13686380033226817No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6460.13040415193900476No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6410.12939483187755738No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6260.12636687169321514No Hit
TGCGCTCAGAGTGGTCGGTGGCGTGGTGGTGCTGGAACAAC6130.12374263953345191No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5500.11102520675921458No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAG5380.10860283861174082No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5320.10739165453800394No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5260.10618047046426704No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5090.10274878225534587No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)