FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464918
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA17650.3796368391845444No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15680.3372637755475159No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15570.3348977669180372No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT12540.26972498376057713No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC9950.2140162351210321No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9350.20111073350569347No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9340.20089564181210448No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7430.1598131283366099No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTG7400.15916785325584296No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG7130.1533603775289406No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6840.14712271841486024No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6100.13120593308927594No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6060.13034556631492006No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5210.11206277235985701No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG5090.1094816720367893No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5040.1084062135688444No Hit
GGAGATTTCAGAGTTATCGGACAGAATTTCCTGAGCTTCGG4980.10711566340731055No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA4910.1056100215521877No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA4890.10517983816500974No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC4740.10195346276117509No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4650.10001763751887428No Hit

[OK]Adapter Content

Adapter graph