FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464918
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT33670.7242137323140855No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21810.4691149837175588No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC17690.3804972059589003No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG16990.3654407874076719No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT16610.35726730305129073No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG10510.2260613699620148No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC10000.21509169358897698No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG9380.2017560085864604No Hit
CCGTTCGCCTCTGATTACTCCCAGGGTGCGTTC7610.1636847788212115No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACCCG7150.15379056091611853No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6650.1430359762366697No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6240.13421721679952164No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5910.1271191909110854No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAACGC5710.12281735703930585No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5210.11206277235985701No Hit
CCGTTCGCAAGCGACTACTCTCAGGGTGCATTC5110.10991185542396724No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC5100.10969676373037826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5090.1094816720367893No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5030.10819112187525541No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG4940.10625529663295463No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG4830.10388928800347588No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA4820.1036741963098869No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4710.10130818768040814No Hit

[OK]Adapter Content

Adapter graph