FastQCFastQC Report
Wed 31 May 2023
EGAF00007943390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541140
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80741.4920353328159073No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21180.3913959419004324No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8780.1622500646782718No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7900.14598809919798944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5740.10607236574638726No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)