FastQCFastQC Report
Wed 31 May 2023
EGAF00007943391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527252
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17170.32565073247706977No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8200.15552335505602635No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7790.14774718730322503No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7770.14736786204699082No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7620.14452292262523422No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7250.13750540538490136No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6920.13124653865703687No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6800.1289705871196316No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6380.12100475673871318No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6110.11588386577955133No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5720.10848702328298424No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5610.10640073437369606No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5400.10241781918323685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)