FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527252
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG92291.750396394892765No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16690.31654692632744874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10660.20218036157283426No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8880.1684204137679895No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8080.15324740351862107No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8000.15173010249368424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7870.14926448832816186No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7260.13769506801301845No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7180.1361777669880816No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7070.13409147807879343No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6440.12214273250741581No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6130.11626319103578554No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6020.11417690212649739No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5970.11322858898591187No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5830.11057331219227239No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5740.10886634853921845No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5300.10052119290206582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)