FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559900
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29020.5183068405072334No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22590.40346490444722277No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15850.2830862654045365No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14100.25183068405072334No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9890.17663868547954992No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9860.17610287551348455No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9790.17485265225933203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8650.15449187354884802No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8560.1528844436506519No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8290.1480621539560636No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6550.11698517592427218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)