FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539765
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28350.5252285716932369No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27310.5059609274406455No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13310.2465887932711458No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11790.21842839013274293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9440.17489092475429122No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6740.12486915602160199No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5980.11078895445240058No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5710.10578677757913167No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5600.10374885366779987No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5580.10337832204755774No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5580.10337832204755774No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)