FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524609
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13670.2605750187282338No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11070.2110142982678528No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9160.1746062305450345No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8780.1673627406315942No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6420.12237685590601763No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5960.11360842074764252No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5610.10693678530105277No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5560.10598369452296853No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5430.1035056584999495No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5380.10255256772186525No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5340.10179009509939785No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)