FastQCFastQC Report
Sun 21 May 2023
EGAF00007943400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524609
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG78551.4973056123703559No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26880.5123816022980925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12860.24513494812326894No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11340.21616098846950776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8950.17060324927708065No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6070.11570522045942788No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6030.11494274783696047No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5930.11303656628079198No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5500.10483998558926744No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5480.10445874927803374No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5460.10407751296680004No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5400.10293380403309893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)