FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580874
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39420.6786325433742946No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27940.4809993217117654No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22480.38700303336007463No Hit
ATGTCCAACATGGACATCGATGGTATTAACA20490.352744312880246No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20280.34912907102056556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19310.33243009671632745No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17150.29524475187390037No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17140.29507259749962983No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG14130.24325413084421063No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12270.2112334172298984No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11410.19642814104263573No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10550.1816228648553731No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10140.17456453551028278No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9640.165956816796758No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9050.15579970871479873No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8530.14684768125273295No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8450.14547044625856898No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8050.13858427128774917No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7440.1280828544572489No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7300.12567269321746197No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7150.12309037760340452No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7140.12291822322913404No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7070.12171314260924054No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6710.1155155851355027No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6360.10949018203603536No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5910.10174323519386304No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5840.10053815457396957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)