FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522582
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG88891.7009770715409256No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68751.3155830089823224No Hit
ATGTCCAACATGGACATCGATGGTATTAACA26830.5134122491781195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14190.27153633305395136No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13480.25794994852482483No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC12770.24436356399569828No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11280.21585129223739052No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG9510.1819810096788638No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8200.15691317343498246No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7590.14524036419164837No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7470.14294407384869745No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7420.1419872862058012No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7270.1391169232771125No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7080.1354811302341068No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6930.1326107673054181No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6840.13088854954820486No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6340.12132067311924252No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5950.11385772950465191No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5630.107734288590116No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5600.10716021600437825No Hit
CGCGAAATTATGAAACGTGACTTTCCGACCG5490.10505528319000655No Hit

[OK]Adapter Content

Adapter graph