FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509077
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17580.3453308635039493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16930.33256265751546427No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13090.2571320252142603No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11780.23139917929900586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9630.18916588256786301No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7550.14830762340471088No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7530.1479147555281421No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7150.14045026587333548No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6800.13357507803338198No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6590.1294499653294099No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6560.12886066351455672No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6320.1241462489957315No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6020.11825323084719992No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5420.10646719455013681No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.10509215698214613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5310.10430642122900857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)