FastQCFastQC Report
Wed 31 May 2023
EGAF00007943409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504653
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT18730.37114611426069005No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17180.3404319403629821No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14320.2837593356226952No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12290.24353367561472933No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10590.2098471623075658No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9500.18824816259885505No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9440.1870592268350728No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6980.13831286052000089No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6800.13474605322865416No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5940.11770464061444201No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5720.11334520948057378No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)