FastQCFastQC Report
Sun 21 May 2023
EGAF00007943410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504653
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27340.5417583963634418No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT20130.39888794874894234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18340.36341803179610543No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17200.34082825228424285No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15460.3063491151345578No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9420.18666291491381207No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9390.18606844703192094No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6810.13494420918928454No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6250.1238474753939836No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6040.11968620022074575No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6010.11909173233885463No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5330.10561712701598922No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)