FastQCFastQC Report
Wed 31 May 2023
EGAF00007943418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421819
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56411.337303440575223No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG52931.2548036005964645No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC51321.2166355711810042No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG33250.7882527814062429No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT31110.7375201211894201No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA30860.7315934085472678No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG25840.6125850186928516No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC24250.5748911262887637No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG21760.5158610683729278No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG21180.5021110950431346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20420.48409388861099195No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC18990.45019309229788135No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18900.44805947574670646No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG17660.41866298104163163No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC15550.36864152634186703No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13560.3214648937103355No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT13090.3103226739430893No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10760.25508571211823083No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9680.22948231350413328No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9600.2275857654586446No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9500.22521508040178373No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8460.2005599558104305No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8210.19463324316827832No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT8090.19178842110004526No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC7760.18396516041240435No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7340.17400828317358868No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6690.15859883030399294No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6500.15409452869595727No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.15030143260497986No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6140.14556006249125808No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5780.13702559628655891No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG5690.13489197973538414No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5440.12896526709323194No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5290.1254092395079406No Hit
GACAAAGCGGAAGCTCAGAGCACCCCGGAAC5100.12090493789990495No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5030.11924545836010231No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4750.11260754020089186No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4750.11260754020089186No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4690.11118512916677532No Hit
CGTCCTTCCGATATCGACACCGCGGCACGCG4450.10549548503030921No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4300.1019394574450179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)