FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476031
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27410.5758028363699003No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17090.35901023252687325No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15000.3151055288416091No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8830.1854921213114272No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6790.14263776938896838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6280.13192418140835366No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4950.10398482451773097No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4940.1037747541651699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)