FastQCFastQC Report
Wed 31 May 2023
EGAF00007943422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422396
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58791.3918218922527674No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20190.47798748094205434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15290.3619825945321452No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14460.3423327872423034No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12660.2997187473366225No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10840.25663121809865624No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10190.2412428147993826No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9770.23129953882139037No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8760.20738832754098052No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7840.1856078182558547No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6600.1562514796541634No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC6480.15341054366045132No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6320.14962262900216858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6110.14465099101317247No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6050.14323052301631645No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5700.13494445970132293No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5410.12807886438318544No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5350.12665839638632942No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4940.11695186507447988No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC4930.11671512040833719No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4900.11600488640990919No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC4500.1065350997642023No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4340.10274718510591957No Hit

[OK]Adapter Content

Adapter graph