FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509788
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31290.6137845535791349No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28510.559252081257307No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25140.4931461705650192No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18440.36171898906996636No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18240.3577957896223528No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17500.3432799516661828No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16110.31601371550526886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14350.2814895603662699No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12530.2457884453929869No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10760.21106813028160726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10370.2034178913587609No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10140.19890621199400532No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8450.1657551766616711No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8270.16222429715881895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7520.14751229923026826No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7370.14456989964455813No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7340.1439814197274161No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7300.14319677983789342No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6430.1261308622407746No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC6430.1261308622407746No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6200.12161918287601906No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5870.11514590378745675No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5750.11279198411888863No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5680.11141886431222389No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5640.11063422442270121No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5360.10514174519604226No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5230.1025916655550935No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5220.1023955055827128No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5130.10063006583128672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)