FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429457
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60351.4052629250425537No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19800.4610473225491725No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC17590.4095869900828255No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16920.39398589381474747No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15250.35509957923610513No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14230.3313486565593296No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11280.26265726254316496No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10410.24239912261297408No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10230.23820778331707249No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9740.226798026344896No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9510.22144242613346624No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9330.21725108683756464No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9280.21608682592203643No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9120.21236119099234613No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC8580.19978717310464145No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7870.18325466810414082No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7240.1685849805684853No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7130.16602360655432324No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7010.16322938035705553No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6400.14902539718761135No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6220.14483405789170978No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6020.1401770142295969No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5800.13505426620127278No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5770.13435570965195584No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5670.1320271878208994No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5650.13156148345468813No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5620.1308629269053712No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5370.1250416223277301No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5330.12411021359530756No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC4980.11596038718661007No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4960.11549468282039878No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4550.10594774331306744No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4510.10501633458064485No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC4460.10385207366511665No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4360.10152355183406021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)