FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486163
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10050.2067207911749763No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7980.164142478962817No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7270.14953832356637586No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7090.14583586163488377No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6920.142339092032919No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6350.13061462924986064No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6220.12794062896600522No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4960.10202339544556044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)