FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445863
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7930.1778573238864853No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5510.1235805617420598No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5170.11595490094490908No Hit
CCACAGATCGTCGAAGATGTCGTTGCGACGACGGCAATCACGCG5120.11483348023944576No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4970.11146921812305573No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4570.10249785247934903No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)