FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445863
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8160.18301585913161666No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5520.12380484588315245No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5220.11707632165037242No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5210.11685203750927975No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4910.11012351327649972No Hit
GCCCTGATGCAGGCATACGGCGGCGGTGGTT4750.10653496701901705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4620.10361927318481237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)