FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443496
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7870.17745368616627885No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7150.16121904143442106No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6970.1571603802514566No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG6350.1431805472879124No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6160.1388964049281166No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5730.1292007143243682No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5410.12198531666576475No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4520.10191749192777387No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4480.10101556722044844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)