FastQCFastQC Report
Wed 31 May 2023
EGAF00007943440

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943440
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443496
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14560.32830059346645746No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8990.20270757797139094No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7970.17970849793459243No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6580.14836661435503362No Hit
ATGTCCAACATGGACATCGATGGTATTAACA6310.142278622580587No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6260.14115121669643016No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5890.13280841315366992No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5520.12446560961090969No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5380.12130887313527067No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4870.10980933311687141No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4800.1082309648790519No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)