FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415647
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15820.3806114322971175No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14200.3416360517458324No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10170.24467877790528983No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7600.18284746431467086No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6840.16456271788320376No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)