FastQCFastQC Report
Sun 21 May 2023
EGAF00007943442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415647
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31590.7600199207500596No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20270.48767343442873395No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12650.30434479257639296No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8370.20137279951497303No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7260.1746674461742777No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4470.10754317966928668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)