FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470466
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23660.5029056297373243No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15280.32478436273822126No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13550.28801231119783366No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11090.23572372923866977No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9600.20405300276746885No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7560.16069173967938172No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7400.1572908562999239No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6170.13114656532034197No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5890.12519501940629077No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.10606505039684058No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4900.10415205349589556No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4870.10351438786224722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)