FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943450

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943450
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447012
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47721.0675328626524567No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29280.6550159727255644No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT20040.4483101124802019No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12550.28075308940252164No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9480.21207484362835896No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8020.17941352804846403No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7270.16263545497660017No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7070.15816130215743648No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.14787075067336No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6180.13825132211215807No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6140.13735649154832533No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6030.1348957074977853No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5530.12371032544987606No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5200.11632797329825598No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5200.11632797329825598No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4810.10760337530088679No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4490.10044473079022487No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4490.10044473079022487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)