FastQCFastQC Report
Sun 21 May 2023
EGAF00007943454

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943454
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441363
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT75361.707438095173361No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45401.028631761158049No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14540.3294340486175778No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12800.2900107168022693No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11650.26395506646456546No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10160.23019600646180127No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8130.1842021193439414No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8060.18261612323642898No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8000.18125669800141833No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7630.17287357571885273No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7560.17128757961134033No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6860.15542761853621623No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5800.1314111060510283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5410.12257484202345915No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4960.11237915276087937No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4910.11124629839837051No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4870.11034001490836341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)