FastQCFastQC Report
Sun 21 May 2023
EGAF00007943455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501781
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15220.3033195756714583No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14120.28139766152963147No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13100.26107006841630115No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12280.24472827787421206No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11070.22061417231820254No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10130.20188090023336874No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9430.18793059123402442No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9280.18494123930559347No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7870.15684133117834276No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7050.14049954063625367No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6840.13631444793645037No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6830.1361151578078883No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG6080.12116839816573366No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)